Index of project documentation files

Modelling Asparagopsis nitrogen bioremediation efficiency in Australian coastal environments

All code and processes used in the project are linked below. Note that some scripts require access to raw data which is not stored on Github. For information on how to access specific data please email the corresponding author.

The results of this project have been published in: Reimer, T., Cresswell, K. A., Fraser, K. M., White, C. A., & Hadley, S. A. (2026). Modelling Asparagopsis nitrogen bioremediation efficiency in Australian coastal environments. Ecological Modelling, 518, 111623. https://doi.org/10.1016/j.ecolmodel.2026.111623.

Page	Description
Model parameterisation	Generates all model parameters for the two Asparagopsis species.
Parameterisation details	Further detail for the Asparagopsis vlaues.
Environmental conditions	Prepares the raw input data for environmental conditions.
Run ambient growth	Runs the model for ambient environmental conditions.
Get growth limitors	Gets growth-limiting information from the simulation results.
Run supplemented growth	Runs the model for supplemented environmental conditions.
Figures for manuscript	Generates the figures for the final manuscript.